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Positivity in the Face of Setbacks: My Developing Journey in Science

Saumya Menon – Motherhood is a full time job. My family is my priority but I continue to yearn for the day when I will get the opportunity to continue my journey pursuing a career in research. I am confident that when the opportunity does present itself, I will be able to smoothly pursue both motherhood and a career as a researcher.

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Saumya Menon, M.Sc.

[su_boxbox title=”About” box_color=”#262733″]Saumya holds a masters degree in biotechnology and has varied interests like reading, listening to music and motivational talks, and watching fitness and lifestyle talks on the YouTube. Currently, she is a full time mother waiting for the chance to pursue her research interests. You can contact her via email.ย [/su_boxbox]

[su_boxnote note_color=”#d5d5d5″]Story Keypoints

  • A broader perspective in life helps to broaden your horizons. Same is true for research too.
  • Strive to learn something new every day.
  • There is always light at the end of a long tunnel. The trick is not to lose hope and cultivate a growth mind-set.[/su_boxnote]

‘Scientific research is one of the most exciting and rewarding of occupations’- Frederick Sanger. And rightly said so.

[dropcap]F[/dropcap]or the longest time, I wanted to be an engineer. Why? Well, my father is one. But as I got further into my studies, I realized, that – more than numbers and equations – it was the development of cellular functions that really fascinated me. Specifically, the topic that really caught my attention in my school days was the evolution of prokaryotic and eukaryotic cells.ย 

Saumya Menon

I got really intrigued by the field of biotechnology which was an upcoming field at the time when I was about to graduate. I wanted to pursue my studies in the same field, but due to lack of space in the college of my choice, I had to opt for another subject. As such, I took up zoology instead. It was my first-hand experience with dissecting small animals. Slowly, I started to realize the beautiful and marvellous complexity and diversity of organisms in nature. The one experiment which I vividly remember was the twitching of a brain dead frog nerve in response to an external stimuli. Through such experiences, I got introduced to the intriguing biology of cells, embryology and so much more. I can honestly say that my perspective dramatically shifted not only about science, but also on life in general.

Finally, my dream of pursuing biotechnology as a major turned into reality after graduating. I was fascinated with recombinant DNA technology and molecular cloning and it limitless possibilities. For my masterโ€™s dissertation work, I got the opportunity to work at the Rajiv Gandhi Centre for Biotechnology at Thiruvananthapuram. It was my first experience working and interacting in a formal research environment. I worked in the Plant Molecular Biology laboratory.

It was inspiring. I was doing what I loved: science. So, what did I specifically work on? Well, the main focus of the scientists in that lab was to create vectors harbouring useful genes from plants and transfer the novel characteristics of that gene to other plants. It is important to note that the research scholars in the lab were very supportive and motivating. I was given the mini project of constructing a binary vector. The target gene to be inserted was the chsgene isolated from ginger. Chalcone synthase (CHS) is a key enzyme in the phenyl propanoid pathway in the plant cell which catalyses the step leading to flavonoid biosynthesis. Flavonoids are compounds that provide pigmentation to flowers, fruits seeds, and leaves. They also have key roles in defence as antimicrobial agents, providing ultraviolet protection, and also possess anti-cancer and antioxidant activities.

However, things didnโ€™t go as planned.

I was motivated by the fact that it would be immensely beneficial if this chsgene could be transferred to a plant and confer that plant with the novel characteristics of chsgene. The gene was excised from the cloning vector pGEMT and ligated to expression vector pRT101. I worked to excise the gene cassette and ligate to the binary vector pCAMBIA. This was used to transform E.coliJM109 cells. And finally, a method known as triparental mating was used to introduce the pCAMBIA plasmid into Agrobacterium strain LBA4404. These cells were preserved in media which could then be further used for transfer of the gene to the plant of choice. Again, I was doing what I loved: science.

By the grace of God, I completed the whole project within the stipulated timeframe. I got a sense of achievement on completing this small project and made up my mind that I wanted to pursue a PhD degree and ultimately become a researcher.

However, things didnโ€™t go as planned. After completing my post grad, I took the national level exam to become a Junior Research Fellow. Unfortunately, I was not successful. Although I was discouraged, I was not deterred. I summoned the strength to look for jobs instead. I was elated when I got my first job as a research co-ordinator at Amrita Institute of Medical Sciences and Research Centre at Kochi. It is a tertiary care hospital with focus on research.

Explore Next:  The Humbug Scientist

Working at AIMS (as it is fondly called) was a life changing experience for me. Though I couldnโ€™t do any wet lab experiments for research purposes, it opened my eyes to the field of clinical research. I worked as the clinic and research coordinator of the pancreas clinic. My boss was a pioneer in the field of pancreatic research and one of the most respected gastroenterologists in India who unfortunately passed away recently.

Our area of research was pancreatitis and its etiology. There was a type of this disease called tropical calcific pancreatitis which was native to the tropics with unknown etiology. My job had two main aspects: co-ordinating both clinic and research activities.

There were a lot of research questions that needed to be answered. We would come up with questions, develop hypotheses, and ultimately design experiments to test them. It was really exciting and rewarding especially when working in groups to think through complex problems together. That is when I realized that research was something I wanted to really pursue as a career. I was finally putting to practice some of the theory in research methodology I had learned before.

We worked on varied topics like studying the spectrum of pancreatitis in children and adolescents, relation between metabolic syndrome and pancreatitis and the clinical profile of idiopathic chronic pancreatitis. With hard work and perseverance, I published 4 papers in reputed journals, including a review article on the history of pancreas and relation between pancreas and diabetes mellitus.[1] [2 ][3] [4]

With my interest in biotechnology, I had a research proposal in mind to further study the genetics of chronic pancreatitis. However, once again, I couldnโ€™t move ahead in that direction. Due to personal commitments, I had to resign from my job. I ultimately got married and moved to Qatar. As a very progressive Middle Eastern country, Qatar puts lots of importance in healthcare and research. There are many institutions here having state-of-the-art research facilities.

I had my first child and I am now a full time mother. However, my research ambitions remain and it has been a struggle navigating being both a mother and a researcher-in-waiting. Motherhood is a full time job. My family is my priority but I continue to yearn for the day when I will get the opportunity to continue my journey pursuing a career in research. I am confident that when the opportunity does present itself, I will be able to smoothly pursue both motherhood and a career as a researcher. I am inspired by all the mothers out there that are able to juggle both motherhood and research or any other career.

I have had a few interviews at some prestigious research institutions here in Qatar. However things havenโ€™t worked out yet. For all those facing obstacles in your pursuits for careers in research; remember Fredrick Sangerโ€™s words and those of Andy Dufresne from the very famous movie- The Shawshank Redemption, โ€œHope is a good thing.โ€

References

  1. Menon S, Rajesh G, Balakrishnan V. Pancreas and Diabetes Mellitus: The Relationship between the Organ and the Disease. J Assoc Physicians India. 2015 Oct;63(10):51-8. Review. PubMed PMID: 27608692.
  2. Rajesh G, Veena AB, Menon S, Balakrishnan V. Clinical profile of early-onset and late-onset idiopathic chronic pancreatitis in South India. Indian J Gastroenterol. 2014 May;33(3):231-6. doi: 10.1007/s12664-013-0421-3. Epub 2013 Nov 14. PubMed PMID: 24222373.
  3. Geetha M, Saumya M, Balakrishnan V. Spectrum of pancreatitis in children and adolescents. Indian J Gastroenterol. 2012 Jul;31(4):175-8. Epub 2012 Aug 25. PubMed PMID: 22923276.
  4. Rajesh G, Kumar H, Menon S, Balakrishnan V. Pancreatitis in the setting of the metabolic syndrome. Indian J Gastroenterol. 2012 Apr;31(2):79-82. doi: 10.1007/s12664-012-0172-6. Epub 2012 Mar 16. PubMed PMID: 22422323.

Cover Image byย Dana Tentis from Pixabay.

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CivicSciTimes - Stories in Science

Unexpected Stories and Spindle Mistakes: Discovering that Wild-type Cells are Full of Surprises

CSM Lab

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Natalie Nannas

Natalie Nannas is an Associate Professor of Biology at Hamilton College in Clinton, NY. She teaches courses in genetics, molecular biology, and bioethics. Dr. Nannas graduated from Grinnell College with bachelor’s degrees in biological chemistry and French. She received her Masterโ€™s and PhD from Harvard University in molecular biology and genetics. Dr. Nannas conducted her postdoctoral research at the University of Georgia where she won a National Science Foundation Plant Genome Postdoctoral Fellowship. At Hamilton College, Dr. Nannas enjoys teaching and sharing her passion for microscopy with her undergraduate research students. When not glued to a microscope, she loves spending time with her husband and two daughters. The narrative below by Natalie Nannas captures the human stories behind the science from a 2022 paper titled โ€œFrequent spindle errors require structural rearrangement to complete meiosis in Zea maysโ€ which was published by her group in 2022 in the International Journal of Molecular Sciences.

Science never works out the way we plan. As scientists, we ask questions, hypothesize and outline our goals โ€ฆ then reality of science occurs. The reality of science is often full of failed controls, endless troubleshooting, and sometimes strange findings that lead us in new and unpredictable directions. Our publications give the impression that we planned these scientific journeys from the beginning and do not tell the human side of the process with all of its twists and turns, dead-ends and U-turns. I want to tell you the real story behind my first publication as a faculty member with my own lab. It did not go as planned due to the COVID-19 pandemic. My lab was shut down in the middle of our investigation, and my students and I were unable to generate new data. In the beginning, it seemed like we were stranded with only control data and no story to tell, but the time away from the lab allowed us to spend more time looking carefully at wild-type cells. What seemed like a dead-end suddenly became its own story when we found something unexpected hiding within microscopy movies. Our wild-type cells were making mistakes, attempting fixes and changing directions, just like we do as scientists.

My scientific journey began with flickering green lights and a microscope (you can read more about it here). As an undergraduate, I was mesmerized by the beauty of watching living cells shuffle fluorescently labeled proteins throughout their cytoplasm. I followed this passion for microscopy into my doctoral dissertation research at Harvard University where I investigated how yeast cells build the machinery needed to pull their chromosomes apart. This machinery is a dynamic collection of long protein tubes called microtubules and other organizing proteins that help move and shuffle microtubules. I loved watching the delicate dance of chromosomes interacting with microtubules of the spindle, and I wanted to continue studying this process in my postdoctoral studies.

During postdoctoral studies at the University of Georgia, I won a fellowship from the National Science Foundation to develop a new technique in microscopy. No one had ever watched plants building their spindles in meiosis, the specialized cell division that produces egg and sperm. Other scientists had performed beautiful microscopy studies observing how mitotic spindles function inside of plant cells, but due to the technical challenges, no one had ever observed live plant cells building spindles in meiosis. I was thrilled to take on this challenge by using version of maize that had fluorescently labeled tubulin, the protein that makes up microtubules of the spindle. With this line of maize, spindles would glow fluorescent green, allowing me to image if only I could extract the meiotic cells.

Dr. Natalie Nannas

We were so busy collecting data and prepping for our mutant studies that we never really took time to analyze the wild-type cells.

After almost a year spent dissecting maize plants, I finally managed to develop a method to isolate these tiny cells and keep them alive in a growth media long enough to image them. This new method of live imaging was going to serve as the foundation of my new lab at Hamilton College, a primarily undergraduate institution. With my students, I planned to investigate the pathways governed spindle assembly. Most animal mitotic cells have a structure called a centrosome that dictates how spindles are formed; however, female animal meiotic cells lack these structures and must use other pathways to direct spindle assembly. Plants also lack centrosomes, and I wanted to inhibit these known animal pathways in our plant live imaging system.

Explore Next:  Fraternizing with Failure

As I set up my lab, my students and I collected live movies of wild-type maize cells building their spindles. I told my students and myself that these movies were not the main event, they were just the control cells so we would have a baseline comparison for our experimental conditions. We were so busy collecting data and prepping for our mutant studies that we never really took the time to analyze the wild-type cells. At the surface level, they built spindles and segregated chromosomes in a generally expected amount of time, so we focused on preparing for our upcoming experimentsโ€ฆ. then March 2020 occurred.

The pandemic forced us to slow down and look more carefully at our wild-type data, and I am grateful for the detour.

My students headed home for spring break with a warning that there may be a delay in coming back to campus due to the spread of COVID-19. None of us were prepared for the shutdown that followed. Like many colleges and universities, our campus was closed for the remainder of the spring 2020 semester and the summer of 2020. My students and I began meeting on Zoom, trying to make a new plan for our research. The only data we had to work with were the microscopy of wild-type maize cells, so we decided to spend time digging more deeply into these movies. Originally, we had only measured the total time it took to build a spindle as it would be a baseline for comparison to our mutants. We had not looked carefully at any of the intermediate time points in the assembly process. When my students looked more closely at our movies, they discovered that wild-type cells built an incorrectly shaped spindle over 60% of the time!

We found that maize meiotic cells often built spindles with three poles instead of two, and they had to actively rearrange their spindle structure to correct this mistake. We also found that in these cells, there was a delay in meiosis as cells refused to progress until this correction had been made. This is an exciting discovery as it showed that plants are error-prone in their spindle assembly, much like human female meiotic cells. Our findings also suggested that meiotic cells were monitoring their spindle shape when determining if they should move forward in meiosis. Previous work has shown that cells monitor the attachment of chromosomes to the spindle to make this decision, but our work adds a new dimension, showing that they also monitor spindle shape. As we continued to analyze our videos, we also learned that cells corrected their spindle morphology in a predictable way. They always collapsed the two poles that were closest together, creating a single pole and resulting in a correct bipolar spindle.

The image shows the first page of the paper which can be accessed here.

My students and I had begun our scientific journey planning to breeze over wild-type cells, moving on to what we envisioned would be a more exciting story of spindle mutants. The pandemic forced us to slow down and look more carefully at our wild-type data, and I am grateful for the detour. I rediscovered my love of closely watching flickering green fluorescent lights, the dance of microtubules sliding into place or making missteps and shuffling into new arrangements. Watching life attempt a complicated process, make mistakes, and try again, is a lesson that never grows old. It reminds me that our scientific journeys are just the same, they start in one direction but are fluid and constantly changing, and hopefully, they end with a functional spindle!

Read the Published Paper

Weiss, J.D., McVey, S.L., Stinebaugh, S.E., Sullivan, C.F., Dawe, R.K., and N.J. Nannas. 2022. Frequent spindle errors require structural rearrangement to complete meiosis in Zea maysInternational Journal of Molecular Sciences, 23 (8):4293โ€“4312.

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ABOUT: Stories in Science is a special series on the Civic Science Times. The main aim is to document the first-hand accounts of the human stories behind the science being published by scientists around the world. Such stories are an important element behind the civic nature of science.

SUBMISSION: Click here to access the story guidelines and submission portal. Please note that not all stories are accepted for publication. After submission, we will let you know whether we have selected the story for the review process.

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