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CivicSciTimes - Stories in Science

From Grandma’s Backyard to the Bench 

CSM Lab

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Rodolfo Jimenez 

[su_boxbox title=”About”]Dr. Jimenez is the Assistant Director of the Summer Bridge at The University of Texas at Austin. [/su_boxbox]

[dropcap]M[/dropcap]y parents were so young when they had me. They both had to put school on hold in order to provide for their new family. Because of my parents’ varying work schedules, my grandmother had a big role in raising me. Because she lived outside of town, my forms of entertainment were either playing outside or watching PBS. This lack of television was instrumental in helping me develop my curiosity for how things worked. This curiosity led me to intensely explore the surroundings of my grandparents’ house. I was constantly digging up the dirt and wondering about its composition. I even found myself mixing certain liquids together to see what the mixture would make. It didn’t stop there. I also tried to see what I could create from loose materials around my grandfather’s garage.

Rodolfo Jimenez

That curiosity continued when I started school. My first real exposure to a scientific laboratory was the summer after 5th grade. There was a summer science camp held by our school district that exposed students to STEM. This camp truly amazed me at what could be done with science. My experience at this camp was transformational as it made me decide that I wanted to pursue a career involving science. The camp showed me the various fields of STEM and just how many day to day actions were able to take place because of science.

After realizing all of this, I knew that if I was to make an impact on the world it would need to be through science. At that time, because of the unawareness of a career as a scientist, it meant that my goal to impact the world through science meant I would pursue a career in the health field. So, I ended up attending Texas State University for college because of the opportunity to play collegiate sports as well as try to earn a spot in their physical therapy school after completing my bachelors. When I first got to the university I was ecstatic that I got to be away from home and on my own.

But, for someone who came from a part of the state that was predominantly Hispanic, it was easy for me to notice that I was one of the few people of color in the class. Initially I didn’t have much of a problem adjusting to my new settings. But as I conversed more with some of my classmates, I started to feel uncomfortable. I believe that once I spoke and they heard my South Texas accent, I was seen as someone who may not be at the same academic level as them.  On top of this newly added pressure to act a certain way, I found my undergraduate courses more challenging than any of my high school or dual enrollment courses.

I didn’t really know what getting a PhD required or what I could do with a PhD.

Struggling in a class was something I had never really had to deal with before. I really didn’t know who to reach out to for help. Of course, I remember there were office hours offered by the professors. However, I felt I would be seen as a failure if I went and asked for help. Furthermore, it would have been a confirmation that I didn’t belong in the class. It is important to note that in the Latino culture, it is looked down upon to ask for help. So I believe this mindset prevented me, as well as others, from asking for help. Because of this unwillingness to ask for help my grades in my STEM classes were not very impressive. By the end of the first semester I had finished with Cs in my STEM lecture courses but had managed to achieve an A and B in my chemistry and biology labs, respectively. Even though I was disappointed with my overall performance, I was glad my grades in the lab courses were much better. It was also around this time that I went to talk to my chemistry professor about how I would be able to explore diseases on a more physiological level. After asking that question, she steered me towards changing my major from biology to biochemistry. She told me this major would give me more hands on experience and preparation for a PhD. It was something that had never really crossed my mind, and to be honest, I didn’t really know what getting a PhD required or what I could do with a PhD. She was great at breaking it down for me.  The main thing I took from my conversations with her was that if I wanted to dive deep into my cardiovascular condition, I needed to get a PhD. So, from there on out, I made it a goal of mine to get a PhD.

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Once I finally started my PhD program, I realized I was going to have to work even harder than I did as an undergraduate. And as one of the few people of color in the department, I felt as though I was a freshman again and was unsure I could actually get through this challenge. Even though I still had some struggles early on, I was able to find mentors that believed in me and pushed to help me become a PhD candidate. After that point, I knew it was on me to finish what I had started and get my PhD. So, with a few more years of blood, tears, and sweat, I was able to successfully defend my dissertation and obtain my doctorate.

Even at this point – where I felt like I was on top of the world –  life came at me at a thousand miles an hour. It was during this time that the federal government shutdown was taking place.  This shutdown eventually led to the elimination of my scientist position at the University of Texas at Austin. But I knew I didn’t have much to time to feel sorry for myself. Thankfully, I was able to find another position that would allow me to work with students who would more than likely need a little guidance when they got to the University of Texas (just like I did when I first started my undergraduate career). It was at this point that I decided to leave research and concentrate on working with students to ensure they are successful when they start their undergraduate careers.

Even though I am no longer a practicing scientist, I am still using all of the critical thinking skills that I obtained while getting a PhD. And because I followed my passion for science, I have been able to live a life that I could’ve never have imagined as a little kid in my grandmother’s backyard.

Featured Image titled “Back Yard” is by Eddie Welker on Flickr | Some rights reserved

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CivicSciTimes - Stories in Science

Unexpected Stories and Spindle Mistakes: Discovering that Wild-type Cells are Full of Surprises

CSM Lab

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Natalie Nannas

Natalie Nannas is an Associate Professor of Biology at Hamilton College in Clinton, NY. She teaches courses in genetics, molecular biology, and bioethics. Dr. Nannas graduated from Grinnell College with bachelor’s degrees in biological chemistry and French. She received her Master’s and PhD from Harvard University in molecular biology and genetics. Dr. Nannas conducted her postdoctoral research at the University of Georgia where she won a National Science Foundation Plant Genome Postdoctoral Fellowship. At Hamilton College, Dr. Nannas enjoys teaching and sharing her passion for microscopy with her undergraduate research students. When not glued to a microscope, she loves spending time with her husband and two daughters. The narrative below by Natalie Nannas captures the human stories behind the science from a 2022 paper titled “Frequent spindle errors require structural rearrangement to complete meiosis in Zea mays” which was published by her group in 2022 in the International Journal of Molecular Sciences.

Science never works out the way we plan. As scientists, we ask questions, hypothesize and outline our goals … then reality of science occurs. The reality of science is often full of failed controls, endless troubleshooting, and sometimes strange findings that lead us in new and unpredictable directions. Our publications give the impression that we planned these scientific journeys from the beginning and do not tell the human side of the process with all of its twists and turns, dead-ends and U-turns. I want to tell you the real story behind my first publication as a faculty member with my own lab. It did not go as planned due to the COVID-19 pandemic. My lab was shut down in the middle of our investigation, and my students and I were unable to generate new data. In the beginning, it seemed like we were stranded with only control data and no story to tell, but the time away from the lab allowed us to spend more time looking carefully at wild-type cells. What seemed like a dead-end suddenly became its own story when we found something unexpected hiding within microscopy movies. Our wild-type cells were making mistakes, attempting fixes and changing directions, just like we do as scientists.

My scientific journey began with flickering green lights and a microscope (you can read more about it here). As an undergraduate, I was mesmerized by the beauty of watching living cells shuffle fluorescently labeled proteins throughout their cytoplasm. I followed this passion for microscopy into my doctoral dissertation research at Harvard University where I investigated how yeast cells build the machinery needed to pull their chromosomes apart. This machinery is a dynamic collection of long protein tubes called microtubules and other organizing proteins that help move and shuffle microtubules. I loved watching the delicate dance of chromosomes interacting with microtubules of the spindle, and I wanted to continue studying this process in my postdoctoral studies.

During postdoctoral studies at the University of Georgia, I won a fellowship from the National Science Foundation to develop a new technique in microscopy. No one had ever watched plants building their spindles in meiosis, the specialized cell division that produces egg and sperm. Other scientists had performed beautiful microscopy studies observing how mitotic spindles function inside of plant cells, but due to the technical challenges, no one had ever observed live plant cells building spindles in meiosis. I was thrilled to take on this challenge by using version of maize that had fluorescently labeled tubulin, the protein that makes up microtubules of the spindle. With this line of maize, spindles would glow fluorescent green, allowing me to image if only I could extract the meiotic cells.

Dr. Natalie Nannas

We were so busy collecting data and prepping for our mutant studies that we never really took time to analyze the wild-type cells.

After almost a year spent dissecting maize plants, I finally managed to develop a method to isolate these tiny cells and keep them alive in a growth media long enough to image them. This new method of live imaging was going to serve as the foundation of my new lab at Hamilton College, a primarily undergraduate institution. With my students, I planned to investigate the pathways governed spindle assembly. Most animal mitotic cells have a structure called a centrosome that dictates how spindles are formed; however, female animal meiotic cells lack these structures and must use other pathways to direct spindle assembly. Plants also lack centrosomes, and I wanted to inhibit these known animal pathways in our plant live imaging system.

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As I set up my lab, my students and I collected live movies of wild-type maize cells building their spindles. I told my students and myself that these movies were not the main event, they were just the control cells so we would have a baseline comparison for our experimental conditions. We were so busy collecting data and prepping for our mutant studies that we never really took the time to analyze the wild-type cells. At the surface level, they built spindles and segregated chromosomes in a generally expected amount of time, so we focused on preparing for our upcoming experiments…. then March 2020 occurred.

The pandemic forced us to slow down and look more carefully at our wild-type data, and I am grateful for the detour.

My students headed home for spring break with a warning that there may be a delay in coming back to campus due to the spread of COVID-19. None of us were prepared for the shutdown that followed. Like many colleges and universities, our campus was closed for the remainder of the spring 2020 semester and the summer of 2020. My students and I began meeting on Zoom, trying to make a new plan for our research. The only data we had to work with were the microscopy of wild-type maize cells, so we decided to spend time digging more deeply into these movies. Originally, we had only measured the total time it took to build a spindle as it would be a baseline for comparison to our mutants. We had not looked carefully at any of the intermediate time points in the assembly process. When my students looked more closely at our movies, they discovered that wild-type cells built an incorrectly shaped spindle over 60% of the time!

We found that maize meiotic cells often built spindles with three poles instead of two, and they had to actively rearrange their spindle structure to correct this mistake. We also found that in these cells, there was a delay in meiosis as cells refused to progress until this correction had been made. This is an exciting discovery as it showed that plants are error-prone in their spindle assembly, much like human female meiotic cells. Our findings also suggested that meiotic cells were monitoring their spindle shape when determining if they should move forward in meiosis. Previous work has shown that cells monitor the attachment of chromosomes to the spindle to make this decision, but our work adds a new dimension, showing that they also monitor spindle shape. As we continued to analyze our videos, we also learned that cells corrected their spindle morphology in a predictable way. They always collapsed the two poles that were closest together, creating a single pole and resulting in a correct bipolar spindle.

The image shows the first page of the paper which can be accessed here.

My students and I had begun our scientific journey planning to breeze over wild-type cells, moving on to what we envisioned would be a more exciting story of spindle mutants. The pandemic forced us to slow down and look more carefully at our wild-type data, and I am grateful for the detour. I rediscovered my love of closely watching flickering green fluorescent lights, the dance of microtubules sliding into place or making missteps and shuffling into new arrangements. Watching life attempt a complicated process, make mistakes, and try again, is a lesson that never grows old. It reminds me that our scientific journeys are just the same, they start in one direction but are fluid and constantly changing, and hopefully, they end with a functional spindle!

Read the Published Paper

Weiss, J.D., McVey, S.L., Stinebaugh, S.E., Sullivan, C.F., Dawe, R.K., and N.J. Nannas. 2022. Frequent spindle errors require structural rearrangement to complete meiosis in Zea maysInternational Journal of Molecular Sciences, 23 (8):4293–4312.

ABOUT: Stories in Science is a special series on the Civic Science Times. The main aim is to document the first-hand accounts of the human stories behind the science being published by scientists around the world. Such stories are an important element behind the civic nature of science.

SUBMISSION: Click here to access the story guidelines and submission portal. Please note that not all stories are accepted for publication. After submission, we will let you know whether we have selected the story for the review process.

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