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CivicSciTimes - Stories in Science

From Bug Barns to Morse Code

When I was seven or eight years old, my parents asked me what I wanted for my birthday.  I thought real hard and then confidently stated, “I want either a diamond or a bug barn.”  I collected bugs in that wire insect prison all summer long.  My parents made the right choice.  In retrospect, I’m sure it wasn’t a tough one, but it fit right in among my chemistry set, the crystals growing in my bedroom, and the numerous generations of sea monkeys I was raising.   

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– Jessica Parks, Ph.D. – 

[su_boxbox title=”About Jessica Parks” box_color=”#262733″]About Jessica Parks:  Jessica Parks is an eyewitness memory expert, working in the court system by day, and indulging her alter ego as an educational course entrepreneur by night.  Follow her @SkilmanOnTheQT. [/su_boxbox]

[su_boxnote note_color=”#DAF7A9″]Take away points

  • Life can take you in many different directions and they are all good.
  • Never give up on your passion. Find a way to use it.
  • Sometimes, new life directions can come out of something as simple as a conversation.[/su_boxnote]

[dropcap]W[/dropcap]hen I was seven or eight years old, my parents asked me what I wanted for my birthday.  I thought real hard and then confidently stated, “I want either a diamond or a bug barn.”  I collected bugs in that wire insect prison all summer long.  My parents made the right choice.  In retrospect, I’m sure it wasn’t a tough one, but it fit right in among my chemistry set, the crystals growing in my bedroom, and the numerous generations of sea monkeys I was raising.   

Jessica Parks, Ph.D.

Flash forward to college and my love for science followed me.  I majored in biology and psychology and I was tickled pink to be able to do both because, of course, I couldn’t pick just one science.  It wasn’t until I was in Dr. Jarvis’s cognitive psychology class that it happened, though.  I believe professors call it the “ah-ha moment.”  The day wasn’t any different than any other day, her lecture no more gripping than previous classes, but it was that day that she made an offhand comment.  She asked, “How do you know that time didn’t start this very second?”  It was simply a question I had never thought about before.  I had never really thought about the fact that I was relying on my memory to believe that something, anything, had happened before that very second.  And, the professor continued… “we know that memory isn’t perfect.  That we sometimes forget things, remember them differently than they really were, remember them differently than others who were there at the same time and saw the same thing.”  So, not only was I not certain that anything existed prior to that second, I couldn’t even count on my memory to tell me the true story if I believed I had a history.  This started me down a road to learning more about memory.  I didn’t know what I wanted to do with that information. I just knew I needed to know everything there was to know about memory.   

So, I never really put the proper thought into whether or not I would actually like working in academia.  Instead, I just assumed that I was on a trajectory to teach and do research just like all of the professors I’d surrounded myself with for the better part of a decade.

Two years later, I was in graduate school studying eyewitness memory.  Four years later, I walked out of that ivory tower with a Ph.D. in hand.  But, what I didn’t do all that time – when I was so carefully studying people’s memories of the past – was to plan for my future.  You see, I assumed that I would go out into the world, find a job teaching, and repeat the cycle.  I would inspire some other student just like Dr. Jarvis inspired me, and that’s how happily ever after would happen.  So, I never really put the proper thought into whether or not I would actually like working in academia.  Instead, I just assumed that I was on a trajectory to teach and do research just like all of the professors I’d surrounded myself with for the better part of a decade.  It was a foregone conclusion and it was bolstered by the fact that I got a job at a small private college after my first interview.

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Quickly, it was clear to me that I had made a mistake.  Teaching was okay the first couple of times I taught a class, but then it became boring and repetitious.  And, it slowly dawned on me that all of the research I was doing was going to sit on a library shelf along with the research of others like me and never get used in real life by real people who really needed the information.  What police officer or juror ever goes to the library and pulls peer-reviewed journal articles to figure out if the story they are hearing is true?

But, I had been fortunate enough to have the opportunity to teach a class on Psychology and Law a few times and I had been infinitely more interested in the subject than the students.  While I knew eyewitness memory like the back of my hand, teaching the class exposed me to other areas of the field that weren’t as familiar.  And so, as it turned out, a few years out of grad school I was hitting the pavement looking for a new career in psychology and law.  And, as luck would have it, I found one.  I began a position doing evaluations and technical assistance for a court program that diverted mentally ill and addicted individuals from jail or prison and into treatment.

As much as I loved the job, something was missing.  I was born to do memory.  It was the only thing in my life that had ever grabbed me by the shoulders and shook me, and after a decade waltzing with it, I’d cut it out of my life.  So, imagine my joy when one day my husband, an avid ham radio aficionado, told me of his trials and tribulations trying to learn Morse code.  As I listened to how he had gone about it (essentially rote memorization), I couldn’t help but think it was an extraordinary difficult way to commit something so complex to memory.  As our conversation unfolded, I came to understand that there really weren’t any good materials on the market for people who wanted to learn the code.  Challenge accepted.

I got to work collecting relevant research and designing a Morse code learning course using the memory principles I’d studied for so long.  1500 audio files and six CDs later, skilman.com was born.  I had poured my heart and soul into those CDs and produced a product that I was proud of, not just because of its sound underpinnings but because all those years of gathering knowledge about memory was finally going to be used by real people. 

Now, three years later, we are gearing up to create On the QT, an online educational game that teaches kids Morse code through a mystery.  The thought of kids using the code that I taught them to hold secret conversations with their friends, do magic tricks, and cheat at cards all while being more prepared for a real-life emergency than most adults truly inspires me.  I never could have imagined that my life would take this turn.  Yet, that little girl who wanted a bug barn is smiling at me and thinks it’s pretty cool.  

Cover Image is by TeroVesalainen from Pixabay | CC0 Creative Commons

CivicSciTimes - Stories in Science

Unexpected Stories and Spindle Mistakes: Discovering that Wild-type Cells are Full of Surprises

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Natalie Nannas

Natalie Nannas is an Associate Professor of Biology at Hamilton College in Clinton, NY. She teaches courses in genetics, molecular biology, and bioethics. Dr. Nannas graduated from Grinnell College with bachelor’s degrees in biological chemistry and French. She received her Master’s and PhD from Harvard University in molecular biology and genetics. Dr. Nannas conducted her postdoctoral research at the University of Georgia where she won a National Science Foundation Plant Genome Postdoctoral Fellowship. At Hamilton College, Dr. Nannas enjoys teaching and sharing her passion for microscopy with her undergraduate research students. When not glued to a microscope, she loves spending time with her husband and two daughters. The narrative below by Natalie Nannas captures the human stories behind the science from a 2022 paper titled “Frequent spindle errors require structural rearrangement to complete meiosis in Zea mays” which was published by her group in 2022 in the International Journal of Molecular Sciences.

Science never works out the way we plan. As scientists, we ask questions, hypothesize and outline our goals … then reality of science occurs. The reality of science is often full of failed controls, endless troubleshooting, and sometimes strange findings that lead us in new and unpredictable directions. Our publications give the impression that we planned these scientific journeys from the beginning and do not tell the human side of the process with all of its twists and turns, dead-ends and U-turns. I want to tell you the real story behind my first publication as a faculty member with my own lab. It did not go as planned due to the COVID-19 pandemic. My lab was shut down in the middle of our investigation, and my students and I were unable to generate new data. In the beginning, it seemed like we were stranded with only control data and no story to tell, but the time away from the lab allowed us to spend more time looking carefully at wild-type cells. What seemed like a dead-end suddenly became its own story when we found something unexpected hiding within microscopy movies. Our wild-type cells were making mistakes, attempting fixes and changing directions, just like we do as scientists.

My scientific journey began with flickering green lights and a microscope (you can read more about it here). As an undergraduate, I was mesmerized by the beauty of watching living cells shuffle fluorescently labeled proteins throughout their cytoplasm. I followed this passion for microscopy into my doctoral dissertation research at Harvard University where I investigated how yeast cells build the machinery needed to pull their chromosomes apart. This machinery is a dynamic collection of long protein tubes called microtubules and other organizing proteins that help move and shuffle microtubules. I loved watching the delicate dance of chromosomes interacting with microtubules of the spindle, and I wanted to continue studying this process in my postdoctoral studies.

During postdoctoral studies at the University of Georgia, I won a fellowship from the National Science Foundation to develop a new technique in microscopy. No one had ever watched plants building their spindles in meiosis, the specialized cell division that produces egg and sperm. Other scientists had performed beautiful microscopy studies observing how mitotic spindles function inside of plant cells, but due to the technical challenges, no one had ever observed live plant cells building spindles in meiosis. I was thrilled to take on this challenge by using version of maize that had fluorescently labeled tubulin, the protein that makes up microtubules of the spindle. With this line of maize, spindles would glow fluorescent green, allowing me to image if only I could extract the meiotic cells.

Dr. Natalie Nannas

We were so busy collecting data and prepping for our mutant studies that we never really took time to analyze the wild-type cells.

After almost a year spent dissecting maize plants, I finally managed to develop a method to isolate these tiny cells and keep them alive in a growth media long enough to image them. This new method of live imaging was going to serve as the foundation of my new lab at Hamilton College, a primarily undergraduate institution. With my students, I planned to investigate the pathways governed spindle assembly. Most animal mitotic cells have a structure called a centrosome that dictates how spindles are formed; however, female animal meiotic cells lack these structures and must use other pathways to direct spindle assembly. Plants also lack centrosomes, and I wanted to inhibit these known animal pathways in our plant live imaging system.

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As I set up my lab, my students and I collected live movies of wild-type maize cells building their spindles. I told my students and myself that these movies were not the main event, they were just the control cells so we would have a baseline comparison for our experimental conditions. We were so busy collecting data and prepping for our mutant studies that we never really took the time to analyze the wild-type cells. At the surface level, they built spindles and segregated chromosomes in a generally expected amount of time, so we focused on preparing for our upcoming experiments…. then March 2020 occurred.

The pandemic forced us to slow down and look more carefully at our wild-type data, and I am grateful for the detour.

My students headed home for spring break with a warning that there may be a delay in coming back to campus due to the spread of COVID-19. None of us were prepared for the shutdown that followed. Like many colleges and universities, our campus was closed for the remainder of the spring 2020 semester and the summer of 2020. My students and I began meeting on Zoom, trying to make a new plan for our research. The only data we had to work with were the microscopy of wild-type maize cells, so we decided to spend time digging more deeply into these movies. Originally, we had only measured the total time it took to build a spindle as it would be a baseline for comparison to our mutants. We had not looked carefully at any of the intermediate time points in the assembly process. When my students looked more closely at our movies, they discovered that wild-type cells built an incorrectly shaped spindle over 60% of the time!

We found that maize meiotic cells often built spindles with three poles instead of two, and they had to actively rearrange their spindle structure to correct this mistake. We also found that in these cells, there was a delay in meiosis as cells refused to progress until this correction had been made. This is an exciting discovery as it showed that plants are error-prone in their spindle assembly, much like human female meiotic cells. Our findings also suggested that meiotic cells were monitoring their spindle shape when determining if they should move forward in meiosis. Previous work has shown that cells monitor the attachment of chromosomes to the spindle to make this decision, but our work adds a new dimension, showing that they also monitor spindle shape. As we continued to analyze our videos, we also learned that cells corrected their spindle morphology in a predictable way. They always collapsed the two poles that were closest together, creating a single pole and resulting in a correct bipolar spindle.

The image shows the first page of the paper which can be accessed here.

My students and I had begun our scientific journey planning to breeze over wild-type cells, moving on to what we envisioned would be a more exciting story of spindle mutants. The pandemic forced us to slow down and look more carefully at our wild-type data, and I am grateful for the detour. I rediscovered my love of closely watching flickering green fluorescent lights, the dance of microtubules sliding into place or making missteps and shuffling into new arrangements. Watching life attempt a complicated process, make mistakes, and try again, is a lesson that never grows old. It reminds me that our scientific journeys are just the same, they start in one direction but are fluid and constantly changing, and hopefully, they end with a functional spindle!

Read the Published Paper

Weiss, J.D., McVey, S.L., Stinebaugh, S.E., Sullivan, C.F., Dawe, R.K., and N.J. Nannas. 2022. Frequent spindle errors require structural rearrangement to complete meiosis in Zea maysInternational Journal of Molecular Sciences, 23 (8):4293–4312.

ABOUT: Stories in Science is a special series on the Civic Science Times. The main aim is to document the first-hand accounts of the human stories behind the science being published by scientists around the world. Such stories are an important element behind the civic nature of science.

SUBMISSION: Click here to access the story guidelines and submission portal. Please note that not all stories are accepted for publication. After submission, we will let you know whether we have selected the story for the review process.

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